Again, my lovely bug report.
Firstly I notice that the reputation bar isn't properly moving on from being honoured, for example my Shado-Pan is revered and shows as 33,088 out of 21,000.
Secondly, I have to note a flaw in this change:
"Added alternate player power bar (replaced normal player power bar when active)"
There are several situations where both normal resource bars and the 'alternate power bar' are required. Specifically, I noticed the first boss of Mogu-shan Vaults (the raid) has such a mechanic where the alternate power bar is an almost permanent fixture while doing a normal rotation. It's naturally an issue to not see normal resource bars. I do approve of adapting the blizz one though. it gets sucked up by action bars in my set-up
EDIT: Also, it is sometimes useful to know the colour of the bar, as in the above example the colour signifies which dog is petrifying and is important for the encounter.