No... what you're missing is that message is generated when nUI has gone through the saved variable data for that player and updated it to the new version of nUI. That message is a confirmation that the update *for that character* was completed.
If at login of one character I could go through and updated the saved variables data for all characters, then I could only show you that message once. But, I can't do that. I can't update the saved variable data for a character until you log in on that character.
But seriously, it takes how long to click the "X" on that box?
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