It sounds to me like nUI6 has assigned the key bindings to its buttons but did not reassign them to the default bars when it exited.
Out of curiosity... if you log in on nUI6, you see the key bindings on the buttons and they work? Yes? If so, log out normally, then turn all addons off and log back in, are there any key bindings on the normal Blizzard action buttons? If not, then nUI6 is causing the problem. If they are there, then try enabling nUI5 and logging in, still no key bindings? Or do they work now?
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