There really is no need to use the new SecureAuraHeaderTemplate if you are just moving and/or skinning the buff-buttons. It's only useful if you want to filter or sort buffs, since that would taint the original Blizzard BuffFrame.
So you seem to be mixing apples with oranges right now. Here's my local copy of Furbish, that I hacked a bit to also add a border. Maybe it'll help. To get the buffs where you want you must move both the BuffFrame and the ConsolidatedBuffs since Blizzards anchors the second row to ConsolidatedBuffs.
http://pastebin.com/axuBEh9G
Looking at your mission statement on what's different in your version of Furbish, it would be how the times are formatted, which is easily changed at the top of the paste I linked.