There are a few addons that just using a profile won't work for. According to the reflux addon page it gives these instructions.
Code:
Now i configure a bunch of stuff and notice my unit frames dont have support for profiles... Well i can fix that! First i need to check the .toc for my unit frames in this case StufUnitFrames. I find the #SavedVariables: StufDB line in the toc indication that is where it saves its configuration information. So now in game I simply add that saved variable to reflux
/reflux add StufDB
Now reflux will emulate a profile for Stuf. I finish up configuring my ui. Im pretty happy with it. Now that im done I need to save the emulated profile