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Personally I would point out the incompatibilities and that you are trying to contact the developer of the other addon to resolve them but in the mean time users will have to decide on which addon is their preference, preferably stop using the other addon in favor of your own of course.
An alternative is to have a pop up YES/NO window come up when it is discovered that both are loaded and asks the question on whether to unload Skillet (YES) or Bagnon (NO) due to incompatibilities and unload the addon requested by the user.
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