WoW doesn't, by default, produce any large log files. Depending on which log files you're seeing, you can simply turn them off with these in-game commands:
taint.log
/console taintlog 0
WoWChatLog.txt
/chatlog
WoWCombatLog.txt
/combatlog
If you intentionally turned on logging and want to keep your old logs, then yes, moving them to another drive is fine. If there is no file with the "right" name in the "right" place when WoW wants to write to it, it will simply create a new file. Moving the file, deleting the file, renaming the file, etc. won't cause any errors.
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