As far as I know (and I could be wrong about this) Carbonite doesn't put any of the "active" tracking skills on their (Carbonite) maps. They only appear on the Blizzard maps.
wonder if there is anyway to layer the carb map over the blizz? Kind of important to a hunter :P
I know you can "merge" the Carbonite and Blizzard minimaps, but I don't know it that will show the hunter tracking on the Carbonite map. It does allow you to see the ore and herb tracking dots from the Blizzard minimap on Carbonite's minimized map though. Might be worth trying.
OK, I finally got on my hunter, and hunter tracking DOES, indeed, work with the maps "merged". I figured it probably would, but the way things work for me, you just never know ....